sbml file Search Results


sbml file biomd0000000106.xml  (Biomodels LLC)
90
Biomodels LLC sbml file biomd0000000106.xml
Sbml File Biomd0000000106.Xml, supplied by Biomodels LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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sbml-qual format model  (Biomodels LLC)
90
Biomodels LLC sbml-qual format model
Sbml Qual Format Model, supplied by Biomodels LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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sbml-qual format model - by Bioz Stars, 2026-04
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the sbml file for the refined active transporter model for kim’s experiment  (Biomodels LLC)
90
Biomodels LLC the sbml file for the refined active transporter model for kim’s experiment
The Sbml File For The Refined Active Transporter Model For Kim’s Experiment, supplied by Biomodels LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 90 stars, based on 1 article reviews
the sbml file for the refined active transporter model for kim’s experiment - by Bioz Stars, 2026-04
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structured sbml file biomd151_new.xml  (Biomodels LLC)
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Biomodels LLC structured sbml file biomd151_new.xml
The incorrect structure of the corresponding <t>SBML</t> models (93 and 94) of <t>the</t> <t>BioModels</t> database can be automatically fixed by going back to the differential equations and extracting the unique structure fulfilling our three conditions. It then correctly includes the reversibility of reactions (1), (2), (3), (6), etc. highlighted in red, and absent from the BioModels database version.
Structured Sbml File Biomd151 New.Xml, supplied by Biomodels LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/structured sbml file biomd151_new.xml/product/Biomodels LLC
Average 90 stars, based on 1 article reviews
structured sbml file biomd151_new.xml - by Bioz Stars, 2026-04
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sbml file biomd0000000223.xml  (Biomodels LLC)
90
Biomodels LLC sbml file biomd0000000223.xml
The incorrect structure of the corresponding <t>SBML</t> models (93 and 94) of <t>the</t> <t>BioModels</t> database can be automatically fixed by going back to the differential equations and extracting the unique structure fulfilling our three conditions. It then correctly includes the reversibility of reactions (1), (2), (3), (6), etc. highlighted in red, and absent from the BioModels database version.
Sbml File Biomd0000000223.Xml, supplied by Biomodels LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/sbml file biomd0000000223.xml/product/Biomodels LLC
Average 90 stars, based on 1 article reviews
sbml file biomd0000000223.xml - by Bioz Stars, 2026-04
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sbml file for imk735  (Biomodels LLC)
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Biomodels LLC sbml file for imk735
Prediction of growth and carbon source consumption. dFBA was used to simulate the growth of Y. lipolytica in media containing 20 g L −1 glucose or glycerol as sole carbon source. The results were compared to representative growth curves, confirming the accurate prediction of growth behavior of Y. lipolytica with <t>iMK735</t>
Sbml File For Imk735, supplied by Biomodels LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/sbml file for imk735/product/Biomodels LLC
Average 90 stars, based on 1 article reviews
sbml file for imk735 - by Bioz Stars, 2026-04
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sbml level 2 version 4 files  (Biomodels LLC)
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Biomodels LLC sbml level 2 version 4 files
Prediction of growth and carbon source consumption. dFBA was used to simulate the growth of Y. lipolytica in media containing 20 g L −1 glucose or glycerol as sole carbon source. The results were compared to representative growth curves, confirming the accurate prediction of growth behavior of Y. lipolytica with <t>iMK735</t>
Sbml Level 2 Version 4 Files, supplied by Biomodels LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/sbml level 2 version 4 files/product/Biomodels LLC
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sbml level 2 version 4 files - by Bioz Stars, 2026-04
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sbml file biomd0000000380.xml  (Biomodels LLC)
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Biomodels LLC sbml file biomd0000000380.xml
Prediction of growth and carbon source consumption. dFBA was used to simulate the growth of Y. lipolytica in media containing 20 g L −1 glucose or glycerol as sole carbon source. The results were compared to representative growth curves, confirming the accurate prediction of growth behavior of Y. lipolytica with <t>iMK735</t>
Sbml File Biomd0000000380.Xml, supplied by Biomodels LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/sbml file biomd0000000380.xml/product/Biomodels LLC
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sbml file biomd0000000049.xml  (Biomodels LLC)
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Biomodels LLC sbml file biomd0000000049.xml
Prediction of growth and carbon source consumption. dFBA was used to simulate the growth of Y. lipolytica in media containing 20 g L −1 glucose or glycerol as sole carbon source. The results were compared to representative growth curves, confirming the accurate prediction of growth behavior of Y. lipolytica with <t>iMK735</t>
Sbml File Biomd0000000049.Xml, supplied by Biomodels LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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sbml file biomd0000000049.xml - by Bioz Stars, 2026-04
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sbml file containing the thermodynamically feasible egf/erk signaling cascade model  (Biomodels LLC)
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Biomodels LLC sbml file containing the thermodynamically feasible egf/erk signaling cascade model
Prediction of growth and carbon source consumption. dFBA was used to simulate the growth of Y. lipolytica in media containing 20 g L −1 glucose or glycerol as sole carbon source. The results were compared to representative growth curves, confirming the accurate prediction of growth behavior of Y. lipolytica with <t>iMK735</t>
Sbml File Containing The Thermodynamically Feasible Egf/Erk Signaling Cascade Model, supplied by Biomodels LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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sbml file containing the thermodynamically feasible egf/erk signaling cascade model - by Bioz Stars, 2026-04
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sbml file biomd0000000056.xml  (Biomodels LLC)
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Biomodels LLC sbml file biomd0000000056.xml
Prediction of growth and carbon source consumption. dFBA was used to simulate the growth of Y. lipolytica in media containing 20 g L −1 glucose or glycerol as sole carbon source. The results were compared to representative growth curves, confirming the accurate prediction of growth behavior of Y. lipolytica with <t>iMK735</t>
Sbml File Biomd0000000056.Xml, supplied by Biomodels LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/sbml file biomd0000000056.xml/product/Biomodels LLC
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sbml file biomd0000000056.xml - by Bioz Stars, 2026-04
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sbml file biomd0000000088.xml  (Biomodels LLC)
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Biomodels LLC sbml file biomd0000000088.xml
Prediction of growth and carbon source consumption. dFBA was used to simulate the growth of Y. lipolytica in media containing 20 g L −1 glucose or glycerol as sole carbon source. The results were compared to representative growth curves, confirming the accurate prediction of growth behavior of Y. lipolytica with <t>iMK735</t>
Sbml File Biomd0000000088.Xml, supplied by Biomodels LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/sbml file biomd0000000088.xml/product/Biomodels LLC
Average 90 stars, based on 1 article reviews
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Image Search Results


The incorrect structure of the corresponding SBML models (93 and 94) of the BioModels database can be automatically fixed by going back to the differential equations and extracting the unique structure fulfilling our three conditions. It then correctly includes the reversibility of reactions (1), (2), (3), (6), etc. highlighted in red, and absent from the BioModels database version.

Journal: PLoS ONE

Article Title: A Unique Transformation from Ordinary Differential Equations to Reaction Networks

doi: 10.1371/journal.pone.0014284

Figure Lengend Snippet: The incorrect structure of the corresponding SBML models (93 and 94) of the BioModels database can be automatically fixed by going back to the differential equations and extracting the unique structure fulfilling our three conditions. It then correctly includes the reversibility of reactions (1), (2), (3), (6), etc. highlighted in red, and absent from the BioModels database version.

Article Snippet: The XPPAUT.ode file (BIOMD151.ode) and the resulting structured SBML file (BIOMD151_new.xml) can be found at http://contraintes.inria.fr/~soliman/ode2pn_data/ together with the biomodels version (BIOMD0000000151.xml), which actually contains more errors than found by , mostly concerning parameter names that are quite error-prone when hand-translated from ODEs to SBML.

Techniques:

The 68 ODEs actually allow the extraction of a unique model fulfilling the three established conditions. It not only correctly reflects the structure described in the article, but also avoids the typos introduced in the hand-written model 151 of the BioModels database; hand-typing an SBML model for that many ODEs with numerous parameters is definitely error-prone.

Journal: PLoS ONE

Article Title: A Unique Transformation from Ordinary Differential Equations to Reaction Networks

doi: 10.1371/journal.pone.0014284

Figure Lengend Snippet: The 68 ODEs actually allow the extraction of a unique model fulfilling the three established conditions. It not only correctly reflects the structure described in the article, but also avoids the typos introduced in the hand-written model 151 of the BioModels database; hand-typing an SBML model for that many ODEs with numerous parameters is definitely error-prone.

Article Snippet: The XPPAUT.ode file (BIOMD151.ode) and the resulting structured SBML file (BIOMD151_new.xml) can be found at http://contraintes.inria.fr/~soliman/ode2pn_data/ together with the biomodels version (BIOMD0000000151.xml), which actually contains more errors than found by , mostly concerning parameter names that are quite error-prone when hand-translated from ODEs to SBML.

Techniques: Extraction

Prediction of growth and carbon source consumption. dFBA was used to simulate the growth of Y. lipolytica in media containing 20 g L −1 glucose or glycerol as sole carbon source. The results were compared to representative growth curves, confirming the accurate prediction of growth behavior of Y. lipolytica with iMK735

Journal: BMC Systems Biology

Article Title: Optimization of lipid production with a genome-scale model of Yarrowia lipolytica

doi: 10.1186/s12918-015-0217-4

Figure Lengend Snippet: Prediction of growth and carbon source consumption. dFBA was used to simulate the growth of Y. lipolytica in media containing 20 g L −1 glucose or glycerol as sole carbon source. The results were compared to representative growth curves, confirming the accurate prediction of growth behavior of Y. lipolytica with iMK735

Article Snippet: The SBML file for iMK735 can be retrieved from the BioModels Database at https://www.ebi.ac.uk/biomodels-main/ where it is stored as MODEL1510060001.

Techniques:

Lipid accumulation and citrate excretion in nitrogen-limited fermentations. In batch fermentations where nitrogen is completely consumed before glucose depletion, growth of Y. lipolytica is arrested but the cells continue to take up glucose. In the following lipid production phase, the glucose is converted to citrate, which is used for acetyl-CoA and subsequent fatty acid synthesis or excreted ( a ). If iMK735 is constrained according to the measured glucose uptake and citrate excretion rate, the lipid synthesis rate can be predicted with high accuracy ( b )

Journal: BMC Systems Biology

Article Title: Optimization of lipid production with a genome-scale model of Yarrowia lipolytica

doi: 10.1186/s12918-015-0217-4

Figure Lengend Snippet: Lipid accumulation and citrate excretion in nitrogen-limited fermentations. In batch fermentations where nitrogen is completely consumed before glucose depletion, growth of Y. lipolytica is arrested but the cells continue to take up glucose. In the following lipid production phase, the glucose is converted to citrate, which is used for acetyl-CoA and subsequent fatty acid synthesis or excreted ( a ). If iMK735 is constrained according to the measured glucose uptake and citrate excretion rate, the lipid synthesis rate can be predicted with high accuracy ( b )

Article Snippet: The SBML file for iMK735 can be retrieved from the BioModels Database at https://www.ebi.ac.uk/biomodels-main/ where it is stored as MODEL1510060001.

Techniques: